{"id":1057,"date":"2014-07-04T22:14:39","date_gmt":"2014-07-04T22:14:39","guid":{"rendered":"http:\/\/daphnia.ecology.uga.edu\/drakelab\/?page_id=1057"},"modified":"2014-07-09T18:48:32","modified_gmt":"2014-07-09T18:48:32","slug":"sismid-2014-mathematical-modeling-of-infectious-diseases","status":"publish","type":"page","link":"https:\/\/daphnia.ecology.uga.edu\/drakelab\/?page_id=1057","title":{"rendered":"SISMID 2014: Mathematical Modeling of Infectious Diseases"},"content":{"rendered":"

Overview<\/h2>\n

Program:<\/strong> 6th Annual Summer Institute in Statistical Modeling of Infectious Diseases
\nLocation:<\/strong> University of Washington
\nDate:<\/strong> July 7-9, 2014
\nInstructors:<\/strong> Pejman Rohani (rohani@umich.edu) & John M. Drake (jdrake@uga.edu)
\nClass objectives:<\/strong>\u00a0Outline<\/a>
\nData for exercises:<\/strong> data.zip<\/a><\/p>\n

Class topics<\/h2>\n

Lecture:\u00a0<\/strong>Mathematical models of infectious diseases<\/a>
\nExercise:\u00a0<\/strong>Introduction to scientific programming in R<\/a>\u00a0(Code<\/a>) (Solutions<\/a>)
\nLecture:\u00a0<\/strong>Equilibrium stability analysis and next generation method<\/a>
\nExercise:\u00a0<\/strong><\/strong>Deterministic models<\/a>\u00a0(Code<\/a>)\u00a0(Solutions<\/a>)
\nLecture:\u00a0<\/strong>Infectious disease management<\/a>
\nExercise:\u00a0<\/strong><\/strong>Pulsed vaccination<\/a>\u00a0(Code<\/a>)\u00a0(Solutions),\u00a0Social distancing<\/a>\u00a0(Code<\/a>)\u00a0(Solutions<\/a>)
\nLecture:\u00a0<\/strong>Parameter estimation<\/a>
\nExercise:\u00a0<\/strong><\/strong>Estimation<\/a>\u00a0(Code<\/a>)\u00a0(Solutions<\/a>)
\nLecture:\u00a0<\/strong>Stochastic models<\/a>
\nExercise:\u00a0<\/strong>Stochastic simulation<\/a> (Code<\/a>)\u00a0(Solutions<\/a>)
\nLecture:<\/strong> Parameter uncertainty<\/a>
\n Exercise:\u00a0<\/strong><\/strong>Sensitivity analysis of deterministic models through latin hypercube sampling<\/a> (Code<\/a>)\u00a0(Solutions<\/a>)
\nLecture:<\/strong> Heterogeneities in contact<\/a>
\nExercise:\u00a0<\/strong><\/strong>Structured models for host heterogeneities<\/a>\u00a0(Code<\/a>)\u00a0(Solutions<\/a>)<\/p>\n

Further exercises<\/h2>\n

Exercise:\u00a0<\/strong>\u00a0<\/strong>Estimating model parameters through maximum likelihood<\/a>\u00a0(Code<\/a>)
\nExercise:\u00a0<\/strong>\u00a0<\/strong>The distribution of outbreak sizes: Immune escape and transmission of equine influenza<\/a> (Code<\/a>)
\nExercise:\u00a0<\/strong>\u00a0<\/strong>Seasonally forced epidemics<\/a> (Code<\/a>)<\/p>\n

Suggested reading (case studies)<\/h2>\n