CSELS (2021)

Location: Online
Date: January-March, 2022
Instructors: John M. Drake (jdrake@uga.edu) & Pej Rohani (rohani@uga.edu)
Data for exercises: data.zip

Syllabus

Syllabus

Project

Assignment

Schedule

Day 1 (January 4, 2022)

Assigned reading: Brett et al. 2020. Detecting critical slowing down in high-dimensional epidemiological systems. PLOS Computational Biology 16:e1007679.

Day 2 (January 11, 2022)

Assigned reading: Saad-Roy, C.M. et al. 2020. Immune life history, vaccination, and the dynamics of SARS-CoV-2 over the next 5 years. Science 370:811-818.

Day 3 (January 18, 2022)

Assigned reading: Drake, J.M. et al. 2021. Five approaches to the suppression of SARS-CoV-2 without intensive social distancing. Proceedings of the Royal Society, Series B 288:20203074. Supplement (please read at least the first three pages of the supplement).

Additional resources

Introduction to R programming

Base R cheat sheet

R-Markdown cheat sheet

Suggested readings (case studies)

Suggested readings (modeling)

Suggested readings (R programming)